• save current network to session
     
  • clear the canvas
     
  • switch to debug mode
     
  • reset biographer
     
  • undo
     
  • redo
     
  • import graph from : JSON file, SBML file, BioModels.net, Reactome
     
  • import JSON graph from string
     
  • export current graph as jSBGN (JSON)
     
  • export current graph as SVG
     
  • export current graph as: png,jpeg,pdf,tiff
     
  • apply grid based layout in browser (if ctrl+click the grid is only initialized)
     
  • apply D3 force based layout in browser
     
  • apply automatic biographer layout
     
  • clone selected objects (or all) with with edge degree > 5
     
  • clombine selected objects
     
  • enable/disable: straighten edges and distributen all points on edges equally
     
  • hide/show all edge handles
     
  • zoom in
     
  • zoom out
     
  • scale to default size
     
  • fit to page
     
  • resize/move all nodes
     
  • resize/move no nodes
     
  • align selected nodes vertically
     
  • align selected nodes horizontally
     
  • align selected nodes left
     
  • align selected nodes top
     
  • align selected nodes right
     
  • align selected nodes bottom
     
  • make the distances of horizontal gaps between nodes equal
     
  • make the distances of vertical gaps between nodes equal
     
  • help Biographer currently works best with Chromium (Chrome), while FireFox also works it is very slow in working with lager graphs. Opera currently does not render the line ends properly.
    ctrl+click select an element to edit (resize, move, align)
    doubleclick deselect all nodes (for editing)
    yes the help is a bit sparse, contact us if you need further help
     
  • select
    ctrl+click to move and resize
  • edit
  • draw edge
  • draw spline
  • delete node
  • focus to node
     
  • SimpleChemical (drag me)
  • Macromolecule (drag me)
  • NucleicAcidFeature (drag me)
  • UnspecifiedEntity (drag me)
  • Entity (drag me)
  • Perturbation (drag me)
  • Phenotype (drag me)
  • Compartment (drag me)
  • Complex (drag me)
  • EmptySet (drag me)
  • Process (drag me)
  • Tag (drag me)
  • LogicalOperator (drag me)
  • Association (drag me)
  • Dissociation (drag me)